{ "_id": "6a16b070acfb0bcc41d84da7", "Type": "Package", "Package": "shar", "Title": "Species-Habitat Associations", "Version": "2.3.1", "Authors@R": "c(person(\"Maximilian H.K.\", \"Hesselbarth\", email = \"mhk.hesselbarth@gmail.com\",\nrole = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-1125-9918\")),\nperson(\"Marco\", \"Sciaini\", email = \"marco.sciaini@posteo.net\",\nrole = \"aut\", comment = c(ORCID = \"0000-0002-3042-5435\")),\nperson(\"Chris\", \"Wudel\", email = \"chris.wudel@tu-dresden.de\",\nrole = \"aut\", comment = c(ORCID = \"0000-0003-0446-4665\")),\nperson(\"Zeke\", \"Marshall\", email = \"ee18zm@leeds.ac.uk\",\nrole = \"ctb\", comment = c(ORCID = \"0000-0001-9260-7827\")),\nperson(\"Thomas\", \"Etherington\", email = \"teth001@aucklanduni.ac.nz\",\nrole = \"ctb\", comment = c(ORCID = \"0000-0002-3187-075X\")),\nperson(\"Janosch\", \"Heinermann\", email = \"janosch.heinermann@tu-dresden.de\",\nrole = \"ctb\", comment = c(ORCID = \"0000-0001-5080-8591\"))\n)", "Maintainer": "Maximilian H.K. Hesselbarth ", "Description": "Analyse species-habitat associations in R. Therefore,\ninformation about the location of the species (as a point\npattern) is needed together with environmental conditions (as a\ncategorical raster). To test for significance habitat\nassociations, one of the two components is randomized. Methods\nare mainly based on Plotkin et al. (2000)\n and Harms et al. (2001)\n.", "License": "GPL (>= 3)", "URL": "https://r-spatialecology.github.io/shar/", "BugReports": "https://github.com/r-spatialecology/shar/issues/", "RoxygenNote": "7.3.2", "VignetteBuilder": "knitr", "Encoding": "UTF-8", "LazyData": "true", "Config/testthat/edition": "3", "Config/pak/sysreqs": "libgdal-dev gdal-bin libgeos-dev libproj-dev\nlibsqlite3-dev", "Repository": "https://r-spatialecology.r-universe.dev", "Date/Publication": "2025-02-13 07:07:07 UTC", "RemoteUrl": "https://github.com/r-spatialecology/shar", "RemoteRef": "HEAD", "RemoteSha": "114d9f3db4f37eb5b00b6ab39d5028db9dbf79c8", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-27 08:46:46 UTC", "User": "root" }, "Author": "Maximilian H.K. Hesselbarth [aut, cre] (ORCID:\n),\nMarco Sciaini [aut] (ORCID: ),\nChris Wudel [aut] (ORCID: ),\nZeke Marshall [ctb] (ORCID: ),\nThomas Etherington [ctb] (ORCID:\n),\nJanosch Heinermann [ctb] (ORCID:\n)", "MD5sum": "a3b153abd146e6210d266fa5e1504614", "_user": "r-spatialecology", "_type": "src", "_file": "shar_2.3.1.tar.gz", "_fileid": "18aef5e8e2c957554fa6748c1619cb771ff04b98395364ec9b66620b4666e394", "_filesize": 1077730, "_sha256": "18aef5e8e2c957554fa6748c1619cb771ff04b98395364ec9b66620b4666e394", "_created": "2026-05-27T08:46:46.000Z", "_published": "2026-05-27T08:50:56.463Z", "_distro": "noble", "_jobs": [ { "job": 78040852891, "time": 209, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7236033460" }, { "job": 78040852870, "time": 197, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7236029260" }, { "job": 78040852953, "time": 165, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7236017948" }, { "job": 78040852894, "time": 155, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7236014670" }, { "job": 78040209181, "time": 218, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7235959677" }, { "job": 78040852895, "time": 131, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7236005842" }, { "job": 78040853005, "time": 170, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7236020793" }, { "job": 78040852945, "time": 138, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7236008965" }, { "job": 78040853044, "time": 164, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7236018886" } ], "_buildurl": "https://github.com/r-universe/r-spatialecology/actions/runs/26500719993", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/r-spatialecology/shar", "_commit": { "id": "114d9f3db4f37eb5b00b6ab39d5028db9dbf79c8", "author": "Maximilian Hesselbarth ", "committer": "GitHub ", "message": "[skip-ci] Update _pkgdown.yml", "time": 1739430427 }, "_maintainer": { "name": "Maximilian H.K. Hesselbarth", "email": "mhk.hesselbarth@gmail.com", "login": "mhesselbarth", "description": "Computational Ecologist | Data Scientist | R Programmer", "uuid": 29225293, "orcid": "0000-0003-1125-9918" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.1.0", "role": "Depends" }, { "package": "classInt", "role": "Imports" }, { "package": "graphics", "role": "Imports" }, { "package": "grDevices", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "spatstat.explore", "role": "Imports" }, { "package": "spatstat.geom", "role": "Imports" }, { "package": "spatstat.model", "role": "Imports" }, { "package": "spatstat.random", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "terra", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "covr", "role": "Suggests" }, { "package": "dplyr", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "spatstat", "version": ">= 2.0-0", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" } ], "_owner": "r-spatialecology", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_topics": [ "habitat-association", "landscape-ecology", "point-pattern-analysis", "spatial-analysis" ], "_stars": 22, "_contributors": [ { "user": "mhesselbarth", "count": 660, "uuid": 29225293 }, { "user": "zekemarshall", "count": 11, "uuid": 60969328 }, { "user": "marcosci", "count": 6, "uuid": 10864574 }, { "user": "chriswudel", "count": 3, "uuid": 66413299 }, { "user": "rubak", "count": 2, "uuid": 6704085 }, { "user": "kant", "count": 1, "uuid": 32717 }, { "user": "bisaloo", "count": 1, "uuid": 10783929 }, { "user": "tretherington", "count": 1, "uuid": 22470547 } ], "_userbio": { "uuid": 42056187, "type": "organization", "name": "r-spatialecology" }, "_downloads": { "count": 189, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/shar" }, "_devurl": "https://github.com/r-spatialecology/shar", "_pkgdown": "https://r-spatialecology.github.io/shar/", "_searchresults": 28, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "extra/shar.html", "manual.pdf" ], "_homeurl": "https://github.com/r-spatialecology/shar", "_realowner": "r-spatialecology", "_cranurl": true, "_releases": [ { "version": "0.1", "date": "2019-01-27" }, { "version": "0.2", "date": "2019-02-06" }, { "version": "0.3", "date": "2019-04-08" }, { "version": "0.3.1", "date": "2019-04-23" }, { "version": "0.4", "date": "2019-05-27" }, { "version": "0.5", "date": "2019-07-09" }, { "version": "1.0", "date": "2019-08-08" }, { "version": "1.0.1", "date": "2019-09-10" }, { "version": "1.1", "date": "2019-11-15" }, { "version": "1.2", "date": "2021-03-15" }, { "version": "1.2.1", "date": "2021-05-04" }, { "version": "1.3", "date": "2021-12-06" }, { "version": "1.3.1", "date": "2022-01-04" }, { "version": "1.3.2", "date": "2022-03-08" }, { "version": "2.0.0", "date": "2022-09-21" }, { "version": "2.0.1", "date": "2022-11-01" }, { "version": "2.0.2", "date": "2022-11-16" }, { "version": "2.0.3", "date": "2023-03-13" }, { "version": "2.0.4", "date": "2023-08-29" }, { "version": "2.1", "date": "2023-10-02" }, { "version": "2.1.1", "date": "2023-10-23" }, { "version": "2.2", "date": "2023-12-21" }, { "version": "2.2.1", "date": "2024-01-09" }, { "version": "2.3", "date": "2024-02-14" }, { "version": "2.3.1", "date": "2025-01-10" } ], "_exports": [ "calculate_energy", "classify_habitats", "fit_point_process", "list_to_randomized", "pack_randomized", "plot_energy", "randomize_raster", "reconstruct_pattern", "reconstruct_pattern_marks", "reconstruct_pattern_multi", "results_habitat_association", "translate_raster", "unpack_randomized" ], "_datasets": [ { "name": "landscape", "title": "Example landscape (random cluster neutral landscape model).", "object": "landscape", "class": [ "PackedSpatRaster" ], "fields": [], "table": false, "tojson": false }, { "name": "species_a", "title": "Species a", "object": "species_a", "class": [ "ppp" ], "fields": [], "table": false, "tojson": false }, { "name": "species_b", "title": "Species b", "object": "species_b", "class": [ "ppp" ], "fields": [], "table": false, "tojson": false } ], "_help": [ { "page": "calculate_energy", "title": "calculate_energy", "topics": [ "calculate_energy" ] }, { "page": "classify_habitats", "title": "classify_habitats", "topics": [ "classify_habitats" ] }, { "page": "fit_point_process", "title": "fit_point_process", "topics": [ "fit_point_process" ] }, { "page": "landscape", "title": "Example landscape (random cluster neutral landscape model).", "topics": [ "landscape" ] }, { "page": "list_to_randomized", "title": "list_to_randomized", "topics": [ "list_to_randomized" ] }, { "page": "pack_randomized", "title": "pack_randomized", "topics": [ "pack_randomized" ] }, { "page": "plot_energy", "title": "plot_energy", "topics": [ "plot_energy" ] }, { "page": "plot.rd_mar", "title": "plot.rd_mar", "topics": [ "plot.rd_mar" ] }, { "page": "plot.rd_multi", "title": "plot.rd_multi", "topics": [ "plot.rd_multi" ] }, { "page": "plot.rd_pat", "title": "plot.rd_pat", "topics": [ "plot.rd_pat" ] }, { "page": "plot.rd_ras", "title": "plot.rd_ras", "topics": [ "plot.rd_ras" ] }, { "page": "print.rd_mar", "title": "print.rd_mar", "topics": [ "print.rd_mar" ] }, { "page": "print.rd_pat", "title": "print.rd_pat", "topics": [ "print.rd_pat" ] }, { "page": "print.rd_ras", "title": "print.rd_ras", "topics": [ "print.rd_ras" ] }, { "page": "randomize_raster", "title": "randomize_raster", "topics": [ "randomize_raster" ] }, { "page": "reconstruct_pattern", "title": "reconstruct_pattern", "topics": [ "reconstruct_pattern" ] }, { "page": "reconstruct_pattern_marks", "title": "reconstruct_pattern_marks", "topics": [ "reconstruct_pattern_marks" ] }, { "page": "reconstruct_pattern_multi", "title": "reconstruct_pattern_multi", "topics": [ "reconstruct_pattern_multi" ] }, { "page": "results_habitat_association", "title": "results_habitat_association", "topics": [ "results_habitat_association" ] }, { "page": "species_a", "title": "Species a", "topics": [ "species_a" ] }, { "page": "species_b", "title": "Species b", "topics": [ "species_b" ] }, { "page": "translate_raster", "title": "translate_raster", "topics": [ "translate_raster" ] }, { "page": "unpack_randomized", "title": "unpack_randomized", "topics": [ "unpack_randomized" ] } ], "_pkglogo": "https://github.com/r-spatialecology/shar/raw/HEAD/man/figures/logo.png", "_readme": "https://github.com/r-spatialecology/shar/raw/HEAD/README.md", "_rundeps": [ "abind", "class", "classInt", "deldir", "e1071", "goftest", "KernSmooth", "lattice", "MASS", "Matrix", "mgcv", "nlme", "polyclip", "proxy", "Rcpp", "rpart", "spatstat.data", "spatstat.explore", "spatstat.geom", "spatstat.model", "spatstat.random", "spatstat.sparse", "spatstat.univar", "spatstat.utils", "tensor", "terra" ], "_vignettes": [ { "source": "get_started.Rmd", "filename": "get_started.html", "title": "Get started", "author": "Maximilian H.K. Hesselbarth", "engine": "knitr::rmarkdown", "headings": [ "Design", "Data", "Preprocessing of input data", "Randomize environmental data", "Randomize location data", "Analyse results", "Utility functions", "Citation", "References" ], "created": "2019-03-27 08:35:23", "modified": "2023-12-15 09:48:59", "commits": 23 } ], "_score": 6.333648756514701, "_indexed": true, "_nocasepkg": "shar", "_universes": [ "r-spatialecology", "mhesselbarth" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "2.3.1", "date": "2026-05-27T08:49:13.000Z", "distro": "noble", "commit": "114d9f3db4f37eb5b00b6ab39d5028db9dbf79c8", "fileid": "512432f82513db1627d54d44232708c1136768058141f2df5d689f627e35ff44", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/r-spatialecology/actions/runs/26500719993" }, { "r": "4.6.0", "os": "linux", "version": "2.3.1", "date": "2026-05-27T08:49:07.000Z", "distro": "noble", "commit": "114d9f3db4f37eb5b00b6ab39d5028db9dbf79c8", "fileid": "312f66740e8fe8a8c132bcc469788eb2ed95dd2a1277ad2694ab7db72db2348d", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/r-spatialecology/actions/runs/26500719993" }, { "r": "4.5.3", "os": "mac", "version": "2.3.1", "date": "2026-05-27T08:48:33.000Z", "commit": "114d9f3db4f37eb5b00b6ab39d5028db9dbf79c8", "fileid": "5c76c697829e1f5f41235a1eb4d1d6cfb38db44802c8c31c031030a39fb591b4", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/r-spatialecology/actions/runs/26500719993" }, { "r": "4.6.0", "os": "mac", "version": "2.3.1", "date": "2026-05-27T08:48:38.000Z", "commit": "114d9f3db4f37eb5b00b6ab39d5028db9dbf79c8", "fileid": "dda4304544c14a386746bea884d0b5aba94a748ff96457192fe71fc72537b7a0", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/r-spatialecology/actions/runs/26500719993" }, { "r": "4.6.0", "os": "wasm", "version": "2.3.1", "date": "2026-05-27T08:49:15.000Z", "commit": "114d9f3db4f37eb5b00b6ab39d5028db9dbf79c8", "fileid": "d879e31b7edbbe68eb31af730ae066a19697e2c5a6c3d51e11480dcf29050e88", "status": "success", "buildurl": "https://github.com/r-universe/r-spatialecology/actions/runs/26500719993" }, { "r": "4.7.0", "os": "win", "version": "2.3.1", "date": "2026-05-27T08:48:26.000Z", "commit": "114d9f3db4f37eb5b00b6ab39d5028db9dbf79c8", "fileid": "52012f1e7a8116be405e582c43fc0484f85d4ff057e8b076ea0abe8d8cefeb73", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/r-spatialecology/actions/runs/26500719993" }, { "r": "4.5.3", "os": "win", "version": "2.3.1", "date": "2026-05-27T08:48:11.000Z", "commit": "114d9f3db4f37eb5b00b6ab39d5028db9dbf79c8", "fileid": "a3e0aecd6c7a8d53dd58f4988f00c71d03c82b4565f1feb2c241afa476f3cecb", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/r-spatialecology/actions/runs/26500719993" }, { "r": "4.6.0", "os": "win", "version": "2.3.1", "date": "2026-05-27T08:48:26.000Z", "commit": "114d9f3db4f37eb5b00b6ab39d5028db9dbf79c8", "fileid": "693b06187668d7931abf85f5461a9ba2d4acff45ca0f3ad2f99cfa9a2fa33882", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/r-spatialecology/actions/runs/26500719993" } ] }