Design | Data | Preprocessing of input data | Randomize environmental data | Randomize location data | Analyse results | Utility functions | Citation | References
Package: shar 2.3.1
Maximilian H.K. Hesselbarth
shar: Species-Habitat Associations
Analyse species-habitat associations in R. Therefore, information about the location of the species (as a point pattern) is needed together with environmental conditions (as a categorical raster). To test for significance habitat associations, one of the two components is randomized. Methods are mainly based on Plotkin et al. (2000) <doi:10.1006/jtbi.2000.2158> and Harms et al. (2001) <doi:10.1111/j.1365-2745.2001.00615.x>.
Authors:
shar_2.3.1.tar.gz
shar_2.3.1.zip(r-4.7)shar_2.3.1.zip(r-4.6)shar_2.3.1.zip(r-4.5)
shar_2.3.1.tgz(r-4.6-any)shar_2.3.1.tgz(r-4.5-any)
shar_2.3.1.tar.gz(r-4.7-any)shar_2.3.1.tar.gz(r-4.6-any)
shar_2.3.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
shar/json (API)
| # Install 'shar' in R: |
| install.packages('shar', repos = c('https://r-spatialecology.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/r-spatialecology/shar/issues
Pkgdown/docs site:https://r-spatialecology.github.io
Datasets:
habitat-associationlandscape-ecologypoint-pattern-analysisspatial-analysis
Last updated from:114d9f3db4. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 209 | ||
| source / vignettes | OK | 218 | ||
| linux-release-x86_64 | OK | 197 | ||
| macos-release-arm64 | OK | 155 | ||
| macos-oldrel-arm64 | OK | 165 | ||
| windows-devel | OK | 170 | ||
| windows-release | OK | 164 | ||
| windows-oldrel | OK | 138 | ||
| wasm-release | OK | 131 |
Exports:calculate_energyclassify_habitatsfit_point_processlist_to_randomizedpack_randomizedplot_energyrandomize_rasterreconstruct_patternreconstruct_pattern_marksreconstruct_pattern_multiresults_habitat_associationtranslate_rasterunpack_randomized
Dependencies:abindclassclassIntdeldire1071goftestKernSmoothlatticeMASSMatrixmgcvnlmepolyclipproxyRcpprpartspatstat.dataspatstat.explorespatstat.geomspatstat.modelspatstat.randomspatstat.sparsespatstat.univarspatstat.utilstensorterra
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| calculate_energy | calculate_energy |
| classify_habitats | classify_habitats |
| fit_point_process | fit_point_process |
| Example landscape (random cluster neutral landscape model). | landscape |
| list_to_randomized | list_to_randomized |
| pack_randomized | pack_randomized |
| plot_energy | plot_energy |
| plot.rd_mar | plot.rd_mar |
| plot.rd_multi | plot.rd_multi |
| plot.rd_pat | plot.rd_pat |
| plot.rd_ras | plot.rd_ras |
| print.rd_mar | print.rd_mar |
| print.rd_pat | print.rd_pat |
| print.rd_ras | print.rd_ras |
| randomize_raster | randomize_raster |
| reconstruct_pattern | reconstruct_pattern |
| reconstruct_pattern_marks | reconstruct_pattern_marks |
| reconstruct_pattern_multi | reconstruct_pattern_multi |
| results_habitat_association | results_habitat_association |
| Species a | species_a |
| Species b | species_b |
| translate_raster | translate_raster |
| unpack_randomized | unpack_randomized |
