Package: shar 2.3.1
Maximilian H.K. Hesselbarth
shar: Species-Habitat Associations
Analyse species-habitat associations in R. Therefore, information about the location of the species (as a point pattern) is needed together with environmental conditions (as a categorical raster). To test for significance habitat associations, one of the two components is randomized. Methods are mainly based on Plotkin et al. (2000) <doi:10.1006/jtbi.2000.2158> and Harms et al. (2001) <doi:10.1111/j.1365-2745.2001.00615.x>.
Authors:
shar_2.3.1.tar.gz
shar_2.3.1.zip(r-4.5)shar_2.3.1.zip(r-4.4)shar_2.3.1.zip(r-4.3)
shar_2.3.1.tgz(r-4.4-any)shar_2.3.1.tgz(r-4.3-any)
shar_2.3.1.tar.gz(r-4.5-noble)shar_2.3.1.tar.gz(r-4.4-noble)
shar_2.3.1.tgz(r-4.4-emscripten)shar_2.3.1.tgz(r-4.3-emscripten)
shar.pdf |shar.html✨
shar/json (API)
NEWS
| # Install 'shar' in R: |
| install.packages('shar', repos = c('https://r-spatialecology.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/r-spatialecology/shar/issues
habitat-associationlandscape-ecologypoint-pattern-analysisspatial-analysis
Last updated 4 months agofrom:9a4dc1db3d. Checks:OK: 5 NOTE: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 27 2024 |
| R-4.5-win | NOTE | Oct 27 2024 |
| R-4.5-linux | NOTE | Oct 27 2024 |
| R-4.4-win | OK | Oct 27 2024 |
| R-4.4-mac | OK | Oct 27 2024 |
| R-4.3-win | OK | Oct 27 2024 |
| R-4.3-mac | OK | Oct 27 2024 |
Exports:calculate_energyclassify_habitatsfit_point_processlist_to_randomizedpack_randomizedplot_energyrandomize_rasterreconstruct_patternreconstruct_pattern_marksreconstruct_pattern_multiresults_habitat_associationtranslate_rasterunpack_randomized
Dependencies:abindclassclassIntdeldire1071goftestKernSmoothlatticeMASSMatrixmgcvnlmepolyclipproxyRcpprpartspatstat.dataspatstat.explorespatstat.geomspatstat.modelspatstat.randomspatstat.sparsespatstat.univarspatstat.utilstensorterra
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| calculate_energy | calculate_energy |
| classify_habitats | classify_habitats |
| fit_point_process | fit_point_process |
| Example landscape (random cluster neutral landscape model). | landscape |
| list_to_randomized | list_to_randomized |
| pack_randomized | pack_randomized |
| plot_energy | plot_energy |
| plot.rd_mar | plot.rd_mar |
| plot.rd_multi | plot.rd_multi |
| plot.rd_pat | plot.rd_pat |
| plot.rd_ras | plot.rd_ras |
| print.rd_mar | print.rd_mar |
| print.rd_pat | print.rd_pat |
| print.rd_ras | print.rd_ras |
| randomize_raster | randomize_raster |
| reconstruct_pattern | reconstruct_pattern |
| reconstruct_pattern_marks | reconstruct_pattern_marks |
| reconstruct_pattern_multi | reconstruct_pattern_multi |
| results_habitat_association | results_habitat_association |
| Species a | species_a |
| Species b | species_b |
| translate_raster | translate_raster |
| unpack_randomized | unpack_randomized |
